Fodor.net

Anthony Fodor's Homepage
Email: anthony.fodor@gmail.com

Software

Note: Users of JGAST please read!


Exon Visualization Applet (Early Beta)

Neuron Simulation Applet

code for the 2004 covariance papers

(new version 1.1 released Sept. 2, 2005. Requires Java 1.5)

code for Scheme 4 and PINC

 

Recent Publications

T. Hamp, J. Jones and A.A. Fodor.
The effects of experimental choices and analysis noise on surveys of the rare biosphere
Applied and Environmental Microbiology.

N. Sanapereddy, T. Hamp, L. Gonzalez and H. Hilger, A.A. Fodor and S.M. Clinton.
Molecular Diversity of a North Carolina Wastewater Treatment Plant As Revealed by Pyrosequencing.
Applied and Environmental Microbiology.

Reid RW, Fodor AA
Determining gene expression on a single pair of microarrays.
BMC Bioinformatics. 2008, 9:489.

Gharaibeh RZ, Fodor AA, Gibas CJ
Using Probe Secondary Structure Information to Enhance Affymetrix GeneChip Background Estimates.
Comput Biol Chem. 2007 April ; 31(2): 92–98.
pdf

Fodor AA, Tickle TL, Richardson C
Towards the uniform distribution of null p-values on microarrays.
Genome Biol. 2007, 8(5):R69.
pdf

Pyott SJ, Meredith AL, Fodor AA, Vázquez AE, Yamoah EN, Aldrich RW
Cochlear function in mice lacking the BK channel alpha, beta1, or beta4 subunits.
J Biol Chem . 2007 Feb 2; 282 (5): 3312-24 . Epub 2006 Nov 29
pdf
Andrea L Meredith, Steven W Wiler, Brooke H Miller, Joseph S Takahashi, Anthony A Fodor, Norman F Ruby, Richard W Aldrich
BK calcium-activated potassium channels regulate circadian behavioral rhythms and pacemaker output
Nature Neuroscience, 9, 1041-1049, 2006
Anthony A. Fodor, Richard W. Aldrich.

Statistical Limits to the Identification of Ion Channel Domains by Sequence Similarity
JGP 127(6), 755-766, 2006
pdf
Anthony A. Fodor, Richard W. Aldrich.
On Evolutionary Conservation of Thermodynamic Coupling in Proteins.
JBC 279(18):19046-19050, 2004
pdf
John P. Dekker, Anthony Fodor, Richard Aldrich and Gary Yellen.
A pertubation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
Bioinformatics 20:1565-1572, 2004
Supplementary Materials
pdf
Anthony A. Fodor and Richard W. Aldrich.
Influence of Conservation on Calculations of Amino Acid Covariance in Multiple Sequence Alignments.
Proteins 56(2): 211-221, 2004
Supplementary Materials
pdf